Fee structure for the MCA course varies depending on the institutions and universities offering it. For example in IGNOU, the course fee is around Rs.12, 200 for each semester excluding other elective subjects but in BITS, Pilani the fee structure for MCA is up to Rs.30, 000/-. Usually the Government and government aided institutions charges less fee for this course compared to the private institutions.
These are the universities that offer distance education :
GITAM University, Visakhapatnam
Bharathiar University (Coimbatore 641046)
Bharathidasan University (Tiruchirappalli 620024)
Dr. C.V. Raman University
Madhya Pradesh Bhoj (Open) University (Bhopal 462016)
University of Madras (Chennai 600005)
Kakatiya University (Warangal 506009)
Madurai Kamaraj University (Madurai 625021)
Mother Teresa Women's University (Kodaikanal 624102)
Deenbandhu Chhou Ram University of Science and Technology
Karpagam University, Tamil Nadu
Adikavi Nannaya University
Devi Ahilya University
Chaudhary Devi Lal University
University of Madras
It will be better if you check with each universities website and then decide about the course.
All the Best.